A public service in New Zealand for high-speed access to up-to-date
DNA & protein biological sequence databanks

Data sets hosted on this site:

Local mirror	Description	Home site
BlastDB	Biosequence databases for BLAST searches	NCBI
Blocks	Highly conserved regions of proteins	NCBI
CUTG	CUTG: Codon Usage Tabulated from GenBank	EBI
Ensembl	Automatic annotation on eukaryotic genomes	EnsEMBL
Ensembl Human	Automatic annotation on eukaryotic genomes	EnsEMBL
Enzyme	Enzyme nomenclature database	ExPASy
euGenes	Eukaryote Genes Summary Databank	IUBio
GenBank Genomes	Whole genome sequence section of GenBank	NCBI
GenBank	GenBank Sequence Database	NCBI
GeneOntology	Vocabularies of gene functions and roles	GeneOntology
GenPept	Database of translated coding sequences from GenBank	ABCC
Golden Path	Golden Path Genome Assemblies from UCSC	UCSC FTP Server
InterPro	InterPro Protein databank	EBI
KEGG	Kyoto Encyclopedia of Genes and Genomes	KEGG
PDB	Protein Data Bank of 3-D macromolecular structures	RCSB
PIR	Protein Information Resource	NBRF
Pfam	The Pfam database of protein domains and HMMs	WUSTL
Prosite*	Database of protein families and domains	ExPASy
Rebase	The Restriction Enzyme Database	NEB
RefSeq	NCBI Reference Sequences	NCBI
RICE	Rice genome project cDNA from AFFRC	NIAR
SRS Databanks	List of active SRS databases around world	EBI
SWISS-PROT*	Annotated protein sequence database	ExPASy (Australia)
Taxonomy	Species names	NCBI, EBI
TigrFAM	tigr protein families	TigrFAM
TrEMBL	A supplement to SWISS-PROT	EBI
UniGene	Unique Gene Sequence Collection for Human, Mouse, Rat and Zebrafish	NCBI

(All data sets are updated nightly)

Data totals about 300 Gigabytes in compressed format (as of Oct. 2004), and are updated from the primary sources nightly.
* See Addendum for commercial restrictions on SWISS-PROT and PROSITE

Current data sets include

DNA biosequence data include: GenBank, EMBL, DDBJ, REFSEQ.
Protein biosequence data include: SWISS-PROT*, TrEMBL, PIR, GENPEPT.
Protein structure data includes: PDB.
Other data include: BLOCKS, ENZYME, PROSITE*, REBASE, UNIGENE, BLAST, INTERPRO, PFAM, CUTG, ENSEMBL, euGenes, KEGG, RICE.

* Commercial use restrictions on SWISS-PROT and PROSITE: Publishers of the SWISS-PROT and PROSITE data sets ask that all commercial users participate in the funding of these important data by paying a license fee. No fee is charged to academic users.

This page was last updated on the 21^st of January, 2010